Modeling nutrient transport coupled with mechanics in collagen
Abstract not provided.
Abstract not provided.
Proposed for publication in Journal of Computational Physics.
This paper presents a three-dimensional generalization of the bridging scale concurrent method, a finite temperature multiple scale method that couples molecular dynamics (MD) to finite elements (FE). The generalizations include the numerical calculation of the boundary condition acting upon the reduced MD region, as such boundary conditions are analytically intractable for realistic three-dimensional crystal structures. The formulation retains key advantages emphasized in previous papers, particularly the compact size of the resulting time history kernel matrix. The coupled FE and reduced MD equations of motion are used to analyze dynamic fracture in a three-dimensional FCC lattice, where interesting physical phenomena such as crack branching are seen. The multiple scale results are further compared to benchmark MD simulations for verification purposes.
Proposed for publication in Journal of Computational Physics.
We present a formulation for coupling atomistic and continuum simulation methods for application to both quasistatic and dynamic analyses. In our formulation, a coarse-scale continuum discretization is assumed to cover all parts of the computational domain with atomistic crystals introduced only in regions of interest. The geometry of the discretization and crystal are allowed to overlap arbitrarily. Our approach uses interpolation and projection operators to link the kinematics of each region, which are then used to formulate a system potential energy from which we derive coupled expressions for the forces acting in each region. A hyperelastic constitutive formulation is used to compute the stress response of the defect-free continuum with constitutive properties derived from the Cauchy-Born rule. A correction to the Cauchy-Born rule is introduced in the overlap region to minimize fictitious boundary effects. Features of our approach will be demonstrated with simulations in one, two and three dimensions.
This report is a collection of documents written by the group members of the Engineering Sciences Research Foundation (ESRF), Laboratory Directed Research and Development (LDRD) project titled 'A Robust, Coupled Approach to Atomistic-Continuum Simulation'. Presented in this document is the development of a formulation for performing quasistatic, coupled, atomistic-continuum simulation that includes cross terms in the equilibrium equations that arise due to kinematic coupling and corrections used for the calculation of system potential energy to account for continuum elements that overlap regions containing atomic bonds, evaluations of thermo-mechanical continuum quantities calculated within atomistic simulations including measures of stress, temperature and heat flux, calculation used to determine the appropriate spatial and time averaging necessary to enable these atomistically-defined expressions to have the same physical meaning as their continuum counterparts, and a formulation to quantify a continuum 'temperature field', the first step towards constructing a coupled atomistic-continuum approach capable of finite temperature and dynamic analyses.
Abstract not provided.