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Image masks of global ship tracks for NASA MODIS data products

Scientific Data

Warburton, Pierce; Shuler, Kurtis; Patel, Lekha

Ship tracks, long thin artificial cloud features formed from the pollutants in ship exhaust, are satellite-observable examples of aerosol-cloud interactions (ACI) that can lead to increased cloud albedo and thus increased solar reflectivity, phenomena of interest in solar radiation management. In addition to ship tracks being of interest to meteorologists and policy makers, their observed cloud perturbations provide benchmark evidence of ACI that remain poorly captured by climate models. To broadly analyze the effects of ship tracks, high-resolution satellite imagery data highlighting their presence are required. To support this, we provide a hand labelled dataset to serve as a benchmark for a variety of subsequent analyses. Established from a previous dataset that identified ship track presence using NASA’s MODIS Aqua satellite imager, our first-of-its-kind dataset is comprised of image masks: capturing full ship track regions, including their contours, emission points and dispersive patterns. In total, 300 images, or around 2,500 masked ship tracks, observed under varying conditions are provided, and may facilitate training of machine learning algorithms to automate extraction.

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Quantifying uncertainty in analysis of shockless dynamic compression experiments on platinum. II. Bayesian model calibration

Journal of Applied Physics

Brown, Justin L.; Davis, Jean-Paul; Tucker, J.D.; Huerta, Jose G.; Shuler, Kurtis

Dynamic shockless compression experiments provide the ability to explore material behavior at extreme pressures but relatively low temperatures. Typically, the data from these types of experiments are interpreted through an analytic method called Lagrangian analysis. In this work, alternative analysis methods are explored using modern statistical methods. Specifically, Bayesian model calibration is applied to a new set of platinum data shocklessly compressed to 570 GPa. Several platinum equation-of-state models are evaluated, including traditional parametric forms as well as a novel non-parametric model concept. The results are compared to those in Paper I obtained by inverse Lagrangian analysis. The comparisons suggest that Bayesian calibration is not only a viable framework for precise quantification of the compression path, but also reveals insights pertaining to trade-offs surrounding model form selection, sensitivities of the relevant experimental uncertainties, and assumptions and limitations within Lagrangian analysis. The non-parametric model method, in particular, is found to give precise unbiased results and is expected to be useful over a wide range of applications. The calibration results in estimates of the platinum principal isentrope over the full range of experimental pressures to a standard error of 1.6%, which extends the results from Paper I while maintaining the high precision required for the platinum pressure standard.

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Pluminate: Quantifying aerosol injection behavior from simulation, experimentation and observations

Patel, Lekha; Foulk, James W.; Pattyn, Christian A.; Warburton, Pierce; Shuler, Kurtis; Mcmichael, Lucas; Blossey, Peter; Schmidt, Michael J.; Roesler, Erika L.; Mondragon, Kathryn; Sanchez, Andres L.; Wright, Jeremy B.; Wood, Robert

Marine aerosol injections are a key component in further understanding of both the potentials of deliberate injection for marine cloud brightening (MCB), a potential climate intervention (CI) strategy, and key aerosol-cloud interaction behaviors that currently form the largest uncertainty in global climate model (GCM) predictions of our climate. Since the rate of spread of aerosols in a marine environment directly translates to the effectiveness and ability of aerosol injections in impacting cloud radiative forcing, it is crucial to understand the spatial and temporal extent of injected-aerosol effects following direct injection into marine environments. The ubiquity of ship-injected aerosol tracks from satellite imagery renders observational validation of new parameterizations possible in 2D, however, 3D compatible data is more scarce, and necessary for the development of subgrid scale parameterizations of aerosol-cloud interactions in GCMs. This report introduces two novel parameterizations of atmospheric aerosol injection behavior suitable for both 3D (GCM-compatible) and 2D (observation-related) modeling. Their applicability is highlighted using a wealth of different observational data: small and larger scale salt-aerosol injection experiments conducted at SNL, 3D large eddy simulations of ship-injected aerosol tracks and 2D satellite images of ship tracks. The power of experimental data in enhancing knowledge of aerosol-cloud interactions is in particular emphasized by studying key aerosol microphysical and optical properties as observed through their mixing in cloud-like environments.

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Chaconne: A Statistical Approach to Nonlocal Compression for Supervised Learning, Semi-Supervised Learning, and Anomaly Detection

Foss, Alexander; Field, Richard V.; Ting, Christina; Shuler, Kurtis; Bauer, Travis L.; Zhao, Sihai D.; Cardenas-Torres, Eduardo

This project developed a novel statistical understanding of compression analytics (CA), which has challenged and clarified some core assumptions about CA, and enabled the development of novel techniques that address vital challenges of national security. Specifically, this project has yielded the development of novel capabilities including 1. Principled metrics for model selection in CA, 2. Techniques for deriving/applying optimal classification rules and decision theory to supervised CA, including how to properly handle class imbalance and differing costs of misclassification, 3. Two techniques for handling nonlocal information in CA, 4. A novel technique for unsupervised CA that is agnostic with regard to the underlying compression algorithm, 5. A framework for semisupervised CA when a small number of labels are known in an otherwise large unlabeled dataset. 6. The academic alliance component of this project has focused on the development of a novel exemplar-based Bayesian technique for estimating variable length Markov models (closely related to PPM [prediction by partial matching] compression techniques). We have developed examples illustrating the application of our work to text, video, genetic sequences, and unstructured cybersecurity log files.

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A Framework for Inverse Prediction Using Functional Response Data

Journal of Computing and Information Science in Engineering

Ries, Daniel; Zhang, Adah; Tucker, J.D.; Shuler, Kurtis; Ausdemore, Madeline

Inverse prediction models have commonly been developed to handle scalar data from physical experiments. However, it is not uncommon for data to be collected in functional form. When data are collected in functional form, it must be aggregated to fit the form of traditional methods, which often results in a loss of information. For expensive experiments, this loss of information can be costly. In this study, we introduce the functional inverse prediction (FIP) framework, a general approach which uses the full information in functional response data to provide inverse predictions with probabilistic prediction uncertainties obtained with the bootstrap. The FIP framework is a general methodology that can be modified by practitioners to accommodate many different applications and types of data. We demonstrate the framework, highlighting points of flexibility, with a simulation example and applications to weather data and to nuclear forensics. Results show how functional models can improve the accuracy and precision of predictions.

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A Bayesian nonparametric analysis for zero-inflated multivariate count data with application to microbiome study

Journal of the Royal Statistical Society. Series C: Applied Statistics

Shuler, Kurtis

High-throughput sequencing technology has enabled researchers to profile microbial communities from a variety of environments, but analysis of multivariate taxon count data remains challenging. We develop a Bayesian nonparametric (BNP) regression model with zero inflation to analyse multivariate count data from microbiome studies. A BNP approach flexibly models microbial associations with covariates, such as environmental factors and clinical characteristics. The model produces estimates for probability distributions which relate microbial diversity and differential abundance to covariates, and facilitates community comparisons beyond those provided by simple statistical tests. We compare the model to simpler models and popular alternatives in simulation studies, showing, in addition to these additional community-level insights, it yields superior parameter estimates and model fit in various settings. The model's utility is demonstrated by applying it to a chronic wound microbiome data set and a Human Microbiome Project data set, where it is used to compare microbial communities present in different environments.

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16 Results
16 Results