Jonathan W. Berry

Discrete Math & Optimization

Author profile picture

Discrete Math & Optimization

jberry@sandia.gov

CV (updated 2018)

(505) 284-4021

Sandia National Laboratories, New Mexico
P.O. Box 5800
Albuquerque, NM 87185-1327

Biography

Jonathan Berry is a Distinguished Member of the Technical Staff at Sandia National Laboratories. He holds a Ph.D. in computer science from Rensselaer Polytechnic Institute and spent almost a decade in liberal arts academia before joining Sandia in 2004. He has led a variety of graph-related projects at Sandia, has served on technical program committees of international conferences/workshops more than ten times, including Supercomputing, ACM/SPAA, IEEE/IPDPS, IEEE/HPEC, ESA-B, SIAM Data Mining and SIAM ACDA. Among his roughly 50 refereed publications are several distinguished papers, including the Best Paper in the Algorithms track of IPDPS 2015. His software and benchmarking interests include the MultiThreaded Graph Library (MTGL), the Mantevo/miniTri mini-app, and variations on the Firehose benchmark, and his current research includes both static and streaming algorithms for the computational kernels underlying graph algorithms and machine learning.

Education

  • Ph.D. in Computer Science, Rensselaer Polytechnic Institute, 1995
  • M.S. in Computer Science, Rensselaer Polytechnic Institute, 1989
  • B.S. in Computer Science and Economics, The American University, 1987

Publications

Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan Berry, Umit Catalyurek, (2022). A Block-Based Triangle Counting Algorithm on Heterogeneous Environments IEEE Transactions on Parallel and Distributed Systems https://doi.org/10.1109/tpds.2021.3093240 Publication ID: 79132

Michael Bender, Jonathan Berry, Martin Farach-Colton, Rob Johnson, Thomas Kroeger, Prashant Pandey, Cynthia Phillips, Shikha Singh, (2021). Advanced Data Structures for Monitoring Cyber Streams https://www.osti.gov/servlets/purl/1901692 Publication ID: 77023

Shikha Singh, Prashant Pandey, Michael Bender, Jonathan Berry, Martín Farach-Colton, Rob Johnson, Thomas Kroeger, Cynthia Phillips, (2021). Timely Reporting of Heavy Hitters Using External Memory ACM Transactions on Database Systems https://doi.org/10.1145/3472392 Publication ID: 76790

Clayton Hughes, Rizwan Ashraf, Roberto Gioiosa, Cynthia Phillips, Jonathan Berry, William Hart, Carl Laird, Sivasankaran Rajamanickam, (2021). ARIAA Update — SST https://www.osti.gov/servlets/purl/1897599 Publication ID: 76739

Jonathan Berry, Anand Ganti, Kenneth Goss, Carolyn Mayer, Uzoma Onunkwo, Cynthia Phillips, Jared Saia, Timothy Shead, (2021). Adapting Secure MultiParty Computation to Support Machine Learning in Radio Frequency Sensor Networks https://doi.org/10.2172/1842271 Publication ID: 76498

Stephen Olivier, Nathan Ellingwood, Jonathan Berry, Daniel Dunlavy, (2021). Performance Portability of an SpMV Kernel Across Scientific Computing and Data Science Applications https://doi.org/10.2172/1887725 Publication ID: 75703

Jonathan Berry, Cynthia Phillips, Alex Porter, (2021). Maintaining Connected Components in Infinite Graph Streams https://doi.org/10.1145/2501221.2501234 Publication ID: 79756

Stephen Olivier, Nathan Ellingwood, Jonathan Berry, Daniel Dunlavy, (2021). Performance Portability of an SpMV Kernel Across Scientific Computing and Data Science Applications 2021 IEEE High Performance Extreme Computing Conference, HPEC 2021 https://doi.org/10.1109/HPEC49654.2021.9622869 Publication ID: 75415

Prashant Pandey, Shikha Singh, Michael Bender, Jonathan Berry, Martín Farach-Colton, Rob Johnson, Thomas Kroeger, Cynthia Phillips, (2020). Timely Reporting of Heavy Hitters using External Memory Proceedings of the ACM SIGMOD International Conference on Management of Data https://doi.org/10.1145/3318464.3380598 Publication ID: 73134

Seher Acer, Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan Berry, Michael Wolf, Umit Catalyurek, (2020). Scalable Triangle Counting on Distributed-Memory Systems https://doi.org/10.1109/HPEC.2019.8916302 Publication ID: 72479

Jonathan Berry, Cynthia Phillips, Jared Saia, (2019). Making social networks more human: A topological approach Statistical Analysis and Data Mining https://doi.org/10.1002/sam.11420 Publication ID: 70351

George Slota, Jonathan Berry, Simon Hammond, Stephen Olivier, Cynthia Phillips, Sivasankaran Rajamanickam, (2019). Scalable generation of graphs for benchmarking HPC community-detection algorithms International Conference for High Performance Computing, Networking, Storage and Analysis, SC https://doi.org/10.1145/3295500.3356206 Publication ID: 66182

George Slota, Jonathan Berry, Simon Hammond, Stephen Olivier, Cynthia Phillips, Sivasankaran Rajamanickam, (2019). Scalable Generation of Graphs for Benchmarking HPC Community-Detection Algorithms https://doi.org/10.1145/3295500.3356206 Publication ID: 66501

Jonathan Berry, Neil Butcher, Umit Catalyurek, Peter Kogge, Paul Lin, Stephen Olivier, Cynthia Phillips, Sivasankaran Rajamanickam, George Slota, Gwendolyn Voskuilen, Abdurrahman Yasar, Jeffrey Young, (2019). Multi-Level Memory Algorithmics for Large Sparse Problems https://doi.org/10.2172/1574408 Publication ID: 66299

Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan Berry, Seher Acer, Michael Wolf, Jeffrey Young, Umit Catalyurek, (2019). Linear Algebra-Based Triangle Counting via Fine-Grained Tasking on Heterogeneous Environments https://www.osti.gov/servlets/purl/1641203 Publication ID: 69869

Jonathan Berry, (2019). Single-Node MultiThreaded Graph Computations with Kokkos https://www.osti.gov/servlets/purl/1648761 Publication ID: 68293

Jonathan Berry, Cynthia Phillips, Steven Plimpton, Alexandra Porter, Timothy Shead, (2019). Maintaining Connected Components for Infinite Graph Streams https://doi.org/10.1145/2501221.2501234 Publication ID: 67646

Thomas Kroeger, Justin Raizes, Evan West, Brian Wright, Cynthia Phillips, Jonathan Berry, Rob Johnson, (2019). Tracking Network Events with Write Optimized Data Structures https://www.osti.gov/servlets/purl/1639501 Publication ID: 67653

Thomas Kroeger, Evan West, Justin Raizes, Cynthia Phillips, Jonathan Berry, (2019). Tracking Network Events with Write Optimized Data Structures https://www.osti.gov/servlets/purl/1639502 Publication ID: 67654

Jonathan Berry, (2019). High-Performance Computing Storage System Challenges for Theoreticians https://www.osti.gov/servlets/purl/1644492 Publication ID: 67403

Jonathan Berry, Kina Kincher-Winoto, Cynthia Phillips, Eriq Augustine, Lise Getoor, (2018). Entity Resolution at Large Scale: Benchmarking and Algorithmics https://doi.org/10.2172/1493841 Publication ID: 60599

Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan Berry, Umit Catalyurek, (2018). Fast Triangle Counting Using Cilk 2018 IEEE High Performance Extreme Computing Conference, HPEC 2018 https://www.osti.gov/servlets/purl/1594701 Publication ID: 60199

George Slota, Jonathan Berry, Cynthia Phillips, Sivasankaran Rajamanickam, (2018). Scalable Generation of Graphs for Benchmarking HPC Community-Detection Algorithms https://doi.org/10.1145/3295500.3356206 Publication ID: 60196

Sivasankaran Rajamanickam, Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan Berry, Umit Catlyurek, (2018). Fast Triangle Counting Using Cilk https://www.osti.gov/servlets/purl/1594706 Publication ID: 60201

Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan Berry, Umit Catalyurek, (2018). Fast Linear Algebra-Based Triangle Analytics with Kokkos Kernels https://www.osti.gov/servlets/purl/1592563 Publication ID: 59895

Neil Butcher, Stephen Olivier, Jonathan Berry, Simon Hammond, Peter Kogge, (2018). Optimizing for KNL usage modes when data doesn’t fit in MCDRAM ACM International Conference Proceeding Series https://www.osti.gov/servlets/purl/1526368 Publication ID: 62528

Jonathan Berry, Neil Butcher, Stephen Olivier, Simon Hammond, Peter Kogge, (2018). Optimizing for KNL Usage Modes When Data Doesn?t Fit in MCDRAM https://www.osti.gov/servlets/purl/1582186 Publication ID: 63747

George Slota, Jonathan Berry, Cynthia Phillips, Sivasankaran Rajamanickam, (2018). Generating massive random graphs that mimic real data https://www.osti.gov/servlets/purl/1581938 Publication ID: 63729

Jonathan Berry, Cynthia Phillips, (2018). Graph Libraries Wish List https://www.osti.gov/servlets/purl/1581939 Publication ID: 63730

Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan Berry, Umit Catalyurek, (2018). Fast Triangle Counting Using Cilk https://doi.org/10.1109/HPEC.2018.8547563 Publication ID: 63473

Jonathan Berry, George Slota, Cynthia Phillips, Sivasankaran Rajamanickam, (2018). Scalable Community Detection Benchmark Generation https://www.osti.gov/servlets/purl/1525712 Publication ID: 62435

Jonathan Berry, Cynthia Phillips, Sivasankaran Rajamanickam, George Slota, (2018). Scalable community detection benchmark generation https://www.osti.gov/servlets/purl/1524279 Publication ID: 62007

Jonathan Berry, Cynthia Phillips, Jared Saia, (2018). Making Social-Network Data Sets More Human to Aid National-Security Graph Analytics https://www.osti.gov/servlets/purl/1507481 Publication ID: 61465

Mehmet Deveci, Michael Wolf, Jonathan Berry, Sivasankaran Rajamanickam, Erik Boman, Christian Trott, Simon Hammond, Stephen Olivier, (2018). Multi-threaded Sparse Matrix Matrix Multiplication with Applications in Scientific Computing and Graph Analytics https://www.osti.gov/servlets/purl/1498626 Publication ID: 60937

Michael Wolf, Daniel Dunlavy, Richard Lehoucq, Jonathan Berry, Daniel Bourgeois, (2018). TriData: High Performance Linear Algebra-Based Data Analytics https://www.osti.gov/servlets/purl/1497538 Publication ID: 60777

Jonathan Berry, (2017). Benchmarking for High-Performance Data Analysis https://www.osti.gov/servlets/purl/1485719 Publication ID: 54579

Michael Wolf, Mehmet Deveci, Jonathan Berry, Simon Hammond, Sivasankaran Rajamanickam, (2017). Fast linear algebra-based triangle counting with KokkosKernels 2017 IEEE High Performance Extreme Computing Conference, HPEC 2017 https://www.osti.gov/servlets/purl/1480379 Publication ID: 53820

Jonathan Berry, Michael Collins, Aaron Kearns, Cynthia Phillips, Jared Saia, Randy Smith, (2017). Cooperative Graph Analytics for Autonomous Data Centers https://www.osti.gov/servlets/purl/1480661 Publication ID: 53914

Michael Wolf, Mehmet Deveci, Jonathan Berry, Simon Hammond, Sivasankaran Rajamanickam, (2017). Fast Linear Algebra-Based Triangle Counting with KokkosKernels https://doi.org/10.1109/HPEC.2017.8091043 Publication ID: 58438

Jonathan Berry, Michael Collins, Aaron Kearns, Cynthia Phillips, Jared Saia, Randy Smith, (2017). Cooperative Computing for Autonomous Data Centers https://doi.org/10.1109/IPDPS.2015.109 Publication ID: 58029

Mehmet Deveci, Christian Trott, Simon Hammond, Michael Wolf, Jonathan Berry, Sivasankaran Rajamanickam, (2017). Performance Portable Sparse Matrix Matrix Multiplication with Applications in Scientific Computing and Graph Analytics https://www.osti.gov/servlets/purl/1466104 Publication ID: 58077

Michael Wolf, Mehmet Deveci, Jonathan Berry, Simon Hammond, Sivasankaran Rajamanickam, (2017). Fast Linear Algebra-Based Triangle Counting with KokkosKernels https://doi.org/10.1109/HPEC.2017.8091043 Publication ID: 58111

Michael Wolf, Mehmet Deveci, Jonathan Berry, Simon Hammond, Sivasankaran Rajamanickam, (2017). Fast Linear Algebra-Based Triangle Counting with KokkosKernels https://doi.org/10.1109/HPEC.2017.8091043 Publication ID: 57221

Richard Lehoucq, Erik Boman, Karen Devine, Jonathan Berry, Daniel Dunlavy, Michael Wolf, Van Henson, Geoff Sanders, (2017). A computational spectral graph theory tutorial https://www.osti.gov/servlets/purl/1456850 Publication ID: 56937

Michael Bender, Jonathan Berry, Simon Hammond, Karl Hemmert, Samuel McCauley, Branden Moore, Benjamin Moseley, Cynthia Phillips, David Resnick, Arun Rodrigues, (2017). Two-level main memory co-design: Multi-threaded algorithmic primitives, analysis, and simulation Journal of Parallel and Distributed Computing https://doi.org/10.1016/j.jpdc.2016.12.009 Publication ID: 46447

Jonathan Berry, (2016). Stateful Streaming in Distributed Memory Supercomputers https://www.osti.gov/servlets/purl/1406959 Publication ID: 47490

Harold Edwards, Stephen Olivier, Jonathan Berry, Greg Mackey, Sivasankaran Rajamanickam, Michael Wolf, Kyungjoo Kim, George Stelle, (2016). Hierarchical Task-Data Parallelism using Kokkos and Qthreads https://doi.org/10.2172/1562647 Publication ID: 52548

Jonathan Berry, (2016). Cooperative Computing for Autonomous Data Centers Storing Social Network Data https://www.osti.gov/servlets/purl/1373212 Publication ID: 51348

Jonathan Berry, (2016). Social Network Analysis Research at Sandia (a non-comprehensive survey) https://www.osti.gov/servlets/purl/1374004 Publication ID: 51437

Michael Bender, Jonathan Berry, Rob Johnson, Thomas Kroeger, Samuel McCauley, Cynthia Phillips, Bertrand Simon, Shikha Singh, David Zage, (2016). Anti-persistence on persistent storage: History-independent sparse tables and dictionaries Proceedings of the ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems https://doi.org/10.1145/2902251.2902276 Publication ID: 49564

Jonathan Berry, Michael Collins, Aaron Kearns, Cynthia Phillips, Jared Saia, Randy Smith, (2016). Cooperative computing for autonomous data centers https://doi.org/10.1109/IPDPS.2015.109 Publication ID: 49563

Jonathan Berry, Aaron Kearns, Cynthia Phillips, Jared Saia, (2015). Finding Non-Human Nodes in Social Networks Using Only Topology https://www.osti.gov/servlets/purl/1338158 Publication ID: 42164

Michael Wolf, Jonathan Berry, Dylan Stark, (2015). A task-based linear algebra Building Blocks approach for scalable graph analytics 2015 IEEE High Performance Extreme Computing Conference, HPEC 2015 https://doi.org/10.1109/HPEC.2015.7322450 Publication ID: 43502

Jonathan Berry, M Bender, Simon Hammond, b moore, Cynthia Phillips, b moseley, Jonathan Berry, (2015). k-Means Clustering for Two-Level Memory Systems https://www.osti.gov/servlets/purl/1331420 Publication ID: 46446

Michael Bender, Jonathan Berry, Simon Hammond, Karl Hemmert, Samuel McCauley, Branden Moore, Benjamin Moseley, Cynthia Phillips, David Resnick, Arun Rodrigues, (2015). Two-level main memory co-design: Multi-threaded algorithmic primitives, analysis, and simulation Proceedings – 2015 IEEE 29th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2015 https://doi.org/10.1109/IPDPS.2015.94 Publication ID: 42692

Michael Bender, Jonathan Berry, Simon Hammond, Branden Moore, Benjamin Moseley, Cynthia Phillips, (2015). k-Means Clustering on Two-Level Memory Systems https://doi.org/10.1145/2818950.2818977 Publication ID: 45353

Michael Wolf, Jonathan Berry, Dylan Stark, (2015). A Task-Based Linear Algebra Building Blocks Approach for Scalable Graph Analytics https://doi.org/10.1109/HPEC.2015.7322450 Publication ID: 45458

Jonathan Berry, Michael Collins, Aaron Kearns, Cynthia Phillips, Jared Saia, Randy Smith, (2015). Cooperative Computing for Autonomous Data Centers Proceedings – 2015 IEEE 29th International Parallel and Distributed Processing Symposium, IPDPS 2015 https://www.osti.gov/servlets/purl/1238307 Publication ID: 41517

Jonathan Berry, Michael Collins, Aaron Kearns, Cynthia Phillips, Jared Saia, Randy Smith, (2015). Cooperative computing for autonomous data centers https://www.osti.gov/servlets/purl/1252918 Publication ID: 43350

Jonathan Berry, Michael Collins, Aaron Kearns, Cynthia Phillips, Jared Saia, (2015). Cyber Graph Queries for Geographically Distributed Data Centers https://doi.org/10.2172/1183059 Publication ID: 43610

Jonathan Berry, Luke Fostvedt, Daniel Nordman, Cynthia Phillips, Seshadhri Comandur, Alyson Wilson, (2015). Why do simple algorithms for triangle enumeration work in the real world? Internet Mathematics https://www.osti.gov/biblio/1061233 Publication ID: 29825

Jonathan Berry, Cynthia Phillips, Bruce Hendrickson, (2014). Workshop on Streaming Graph Algorithms (WSGA) Overview https://www.osti.gov/servlets/purl/1514565 Publication ID: 39503

Jonathan Berry, Aaron Kearns, Cynthia Phillips, Jared Saia, (2014). Finding a planted clique in a distributed social network https://www.osti.gov/servlets/purl/1496707 Publication ID: 37538

Tamara Kolda, Todd Plantenga, Ali Pinar, Seshadhri Comandur, Jonathan Berry, Madhav Jha, Cynthia Phillips, (2014). Sandia Software for Networks from DARPA GRAPHS Program https://www.osti.gov/servlets/purl/1145819 Publication ID: 40718

Jonathan Berry, Michael Wolf, Dylan Stark, (2014). Graph Exploration: to Linear Algebra (and Beyond?) https://www.osti.gov/servlets/purl/1145439 Publication ID: 40783

Jonathan Berry, Cynthia Phillips, (2014). Graph Algorithms for Autonomous Distributed Data Centers https://www.osti.gov/servlets/purl/1712598 Publication ID: 40833

Jonathan Berry, Vitus Leung, Cynthia Phillips, Ali Pinar, David Robinson, (2014). Statistically significant relational data mining : https://doi.org/10.2172/1204082 Publication ID: 37160

Jonathan Berry, Cynthia Phillips, Steven Plimpton, Timothy Shead, (2014). Maintaining Connected Components for Infinite Graph Streams https://doi.org/10.1145/2501221.2501234 Publication ID: 37009

Jonathan Berry, Daniel Dunlavy, Cynthia Phillips, David Robinson, (2013). Community Detection: A Bayesian Approach and the Challenge of Evaluation https://www.osti.gov/servlets/purl/1079010 Publication ID: 33492

Jonathan Berry, William Hart, Cynthia Phillips, Jean-Paul Watson, (2013). Sensor Placement for Municipal Water Networks https://doi.org/10.1061/40685(2003)40 Publication ID: 33077

Jonathan Berry, Cynthia Phillips, Steven Plimpton, (2013). Maintaining connected components for infinite graph streams https://www.osti.gov/biblio/1063365 Publication ID: 32154

Katherine Klise, William Hart, John Siirola, Cynthia Phillips, Sean Mckenna, David Hart, Jonathan Berry, Jean-Paul Watson, (2012). Water security toolkit : https://www.osti.gov/servlets/purl/1295398 Publication ID: 29884

Jonathan Berry, (2012). Graph Analysis with High-Performance Computing https://www.osti.gov/servlets/purl/1650472 Publication ID: 28495

Jonathan Berry, Steven Plimpton, Seshadhri Comandur, (2012). Challenges in Streaming Graph Analysis https://www.osti.gov/biblio/1073138 Publication ID: 28850

Jonathan Berry, Daniel Dunlavy, Cynthia Phillips, David Robinson, (2012). Community Detection: A Bayesian Approach and the Challenge of Evaluation https://www.osti.gov/biblio/1067771 Publication ID: 27675

Jonathan Berry, Daniel Dunlavy, Cynthia Phillips, David Robinson, (2012). Parallel Bayesian Methods for Community Detection https://www.osti.gov/biblio/1069032 Publication ID: 26682

Bruce Hendrickson, Jonathan Berry, (2011). CHALLENGES IN PARALLEL GRAPH PROCESSING Parallel Processing Letters https://doi.org/10.1142/s0129626407002843 Publication ID: 8860

Jonathan Berry, Steven Plimpton, (2011). Challenges in Streaming Analysis https://www.osti.gov/servlets/purl/1111693 Publication ID: 25322

Jonathan Berry, Steven Plimpton, (2011). Challenges in Streaming Graph Analysis https://www.osti.gov/servlets/purl/1143436 Publication ID: 24006

Cynthia Phillips, Erik Boman, Robert Carr, William Hart, Jonathan Berry, Jean-Paul Watson, David Hart, Sean Mckenna, Lee Riesen, (2010). Sensor placement for municipal water networks https://www.osti.gov/biblio/1038219 Publication ID: 21086

Dylan Stark, Richard Murphy, Brian Barrett, Jonathan Berry, (2010). Accelerating multicore graph algorithms by trading latency for bandwidth https://www.osti.gov/biblio/1028368 Publication ID: 20092

Jonathan Berry, (2010). Listing triangles in expected linear time on a class of power law graphs https://www.osti.gov/biblio/1021102 Publication ID: 19018

Karen Devine, Steven Plimpton, Greg Bayer, Brian Barrett, Jonathan Berry, (2010). Comparing Programming Paradigms for Graph Algorithms https://www.osti.gov/servlets/purl/1141842 Publication ID: 17703

Brian Barrett, Jonathan Berry, Richard Murphy, Kyle Wheeler, (2009). Implementing a portable multi-threaded graph library: The mtgl on qthreads IPDPS 2009 – Proceedings of the 2009 IEEE International Parallel and Distributed Processing Symposium https://www.osti.gov/servlets/purl/1141359 Publication ID: 15604

Jonathan Berry, Erik Boman, Cynthia Phillips, Lee Riesen, (2008). Low-memory Lagrangian relaxation methods for sensor placement in municipal water networks World Environmental and Water Resources Congress 2008: Ahupua’a – Proceedings of the World Environmental and Water Resources Congress 2008 https://www.osti.gov/servlets/purl/1146314 Publication ID: 12552

Bruce Hendrickson, Randall Laviolette, Cynthia Phillips, Jonathan Berry, (2008). Tolerating the community detection resolution limit with edge weighting Proposed for publication in the Proceedings of the National Academy of Sciences. https://www.osti.gov/biblio/967791 Publication ID: 15406

William Hart, Jonathan Berry, Erik Boman, Regan Murray, Cynthia Phillips, Lee Riesen, Jean-Paul Watson, (2008). The TEVA-SPOT toolkit for drinking water contaminant warning system design World Environmental and Water Resources Congress 2008: Ahupua’a – Proceedings of the World Environmental and Water Resources Congress 2008 https://www.osti.gov/biblio/946963 Publication ID: 14533

William Hart, Jonathan Berry, Erik Boman, Cynthia Phillips, Lee Riesen, Jean-Paul Watson, (2008). Limited-memory techniques for sensor placement in water distribution networks Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) https://www.osti.gov/servlets/purl/1146712 Publication ID: 11463

Karen Devine, Jonathan Berry, Steven Plimpton, (2008). The PageRank Derby https://www.osti.gov/servlets/purl/1142880 Publication ID: 14384

William Hart, Cynthia Phillips, Jonathan Berry, Erik Boman, Lee Riesen, Jean-Paul Watson, (2008). U. S. Environmental Protection Agency uses Operations Research to Reduce Drinking Water Contamination Risks INFORMS Interfaces Journal https://www.osti.gov/biblio/1142978 Publication ID: 14354

Jonathan Berry, (2008). Informatics Architectures https://www.osti.gov/servlets/purl/1712563 Publication ID: 13317

Jonathan Berry, (2008). Cray XMT Brings New Energy to High-Performance Computing SciDAC Review https://www.osti.gov/biblio/1145568 Publication ID: 13475

Jonathan Berry, (2008). Graph Analysis with High-Performance Computing https://www.osti.gov/servlets/purl/1712586 Publication ID: 13476

Jonathan Berry, (2008). The MultiThreaded Graph Library https://www.osti.gov/servlets/purl/1713125 Publication ID: 12999

William Hart, Lee Riesen, Jonathan Berry, Robert Heaphy, Cynthia Phillips, (2008). Nightly Software Testing in Acro with EXACT and FAST https://www.osti.gov/servlets/purl/1712959 Publication ID: 12634

Jonathan Berry, Robert Carr, William Hart, Vitus Leung, Cynthia Phillips, Jean-Paul Watson, (2008). Designing Contamination Warning System for Municipal Water Networks Using Imperfect Sensors Journal of Water Resources Planning and Management https://www.osti.gov/biblio/1146387 Publication ID: 12548

William Hart, Jonathan Berry, Erik Boman, Robert Carr, Lee Riesen, Cynthia Phillips, Jean-Paul Watson, (2008). Sandia/EPA TEVA-SPOT Water Security Team Chosen as Finalist for 2008 Edelman Award Competition https://www.osti.gov/servlets/purl/1713101 Publication ID: 12407

Jonathan Berry, Henry Lin, Erik Lauer, Cynthia Phillips, (2007). Scheduling manual sampling for contamination detection in municipal water networks 8th Annual Water Distribution Systems Analysis Symposium 2006 https://www.osti.gov/biblio/892058 Publication ID: 7466

William Hart, Erik Boman, Lee Riesen, Jonathan Berry, Cynthia Phillips, Jean-Paul Watson, (2007). Limited-Memory Techniques for Sensor Placement in Water Distribution Networks https://www.osti.gov/servlets/purl/1146836 Publication ID: 11772

William Hart, Jonathan Berry, Cynthia Phillips, Jean-Paul Watson, (2007). The Battle of the Water Sensor Networks (BWSN): A Design Challenge for Engineers and Algorithms Journal of Water Resources, Planning and Management https://www.osti.gov/biblio/1147317 Publication ID: 10984

William Hart, Jonathan Berry, Robert Heaphy, Cynthia Phillips, (2007). EXACT: The EXperimental Algorithmics Computational Toolkit https://www.osti.gov/servlets/purl/1147363 Publication ID: 10567

William Hart, Jonathan Berry, Cynthia Phillips, Jean-Paul Watson, Lee Riesen, (2007). SPOT: A Sensor Placement Optimization Toolkit for Drinking Water Contaminant Warning System Design https://www.osti.gov/servlets/purl/1147328 Publication ID: 10569

Jonathan Berry, William Hart, (2007). Morphing of Water Networks https://www.osti.gov/servlets/purl/1147259 Publication ID: 10570

Bruce Hendrickson, Jonathan Berry, (2007). Multithreaded Algorithms for Processing Massive Graphs Chapter in %22Petascale Computing: Algorithms and Applications%22 https://www.osti.gov/biblio/1147175 Publication ID: 10572

Jean-Paul Watson, Jonathan Berry, Robert Carr, (2007). Abstracts for INFORMS Parallel Combinatorial Optimization Session https://www.osti.gov/servlets/purl/1148244 Publication ID: 10187

Jonathan Berry, Robert Carr, William Hart, (2007). Scalable water network sensor placement via aggregation https://www.osti.gov/servlets/purl/1147923 Publication ID: 9910

Richard Murphy, Jonathan Berry, William McLendon, Bruce Hendrickson, (2006). DFS: A Simple to Write Yet Difficult to Execute Benchmark https://doi.org/10.1109/IISWC.2006.302741 Publication ID: 8296

Bruce Hendrickson, Jonathan Berry, William McLendon, Richard Murphy, (2006). High Performance Graph Queries https://www.osti.gov/servlets/purl/1264318 Publication ID: 8081

Jonathan Berry, (2006). Massive Multithreading for Discrete Unstructured Computations: An Overview of Hardware Software and Algorithms https://www.osti.gov/servlets/purl/1725697 Publication ID: 8083

Keith Underwood, Megan Vance, Bruce Hendrickson, Jonathan Berry, (2006). Analyzing the Scalability of Graph Algorithms on Eldorado https://www.osti.gov/servlets/purl/1141577 Publication ID: 8141

Jonathan Berry, (2006). Massive Multithreading for Unstructured Problems https://www.osti.gov/servlets/purl/1724642 Publication ID: 8162

William Hart, Jonathan Berry, Robert Carr, Cynthia Phillips, Jean-Paul Watson, (2006). Sensor Placement to Satisfy Water Security and Operational Objectives https://www.osti.gov/servlets/purl/1266068 Publication ID: 7898

Jonathan Berry, William McLendon, Bruce Hendrickson, (2006). DFS :a simple yet difficult benchmark for conventional architectures https://www.osti.gov/biblio/893137 Publication ID: 7520

William Hart, Jonathan Berry, Jean-Paul Watson, Robert Carr, Cynthia Phillips, Vitus Leung, (2006). On the Placement of Imperfect Sensors in Municipal Water Networks https://www.osti.gov/servlets/purl/1264620 Publication ID: 7241

Robert Carr, Jonathan Berry, William Hart, Cynthia Phillips, Jean-Paul Watson, (2006). Robust Sensor Placement for Realistic Surveillance Problems https://www.osti.gov/servlets/purl/1729764 Publication ID: 7218

Keith Underwood, Jonathan Berry, Bruce Hendrickson, (2006). Scalability of Graph Algorithms on Eldorado https://www.osti.gov/servlets/purl/1319896 Publication ID: 7233

Jonathan Berry, William Hart, Cynthia Phillips, Jean-Paul Watson, (2005). Validation and assessment of integer programming sensor placement models https://www.osti.gov/biblio/950899 Publication ID: 4576

Jonathan Berry, William Hart, Cynthia Phillips, (2005). Water quality sensor placement in water networks with budget constraints https://www.osti.gov/biblio/950963 Publication ID: 4588

William Hart, Cynthia Phillips, Jonathan Berry, Jean-Paul Watson, (2004). Sensor placement in municipal water networks Proposed for publication in the Journal of Water Resources Planning and Management. https://www.osti.gov/biblio/951710 Publication ID: 3819

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Awards & Recognition

2015

Jonathan W. Berry, Best Paper finalist, IEEE High Performance Extreme Computing Conference, September 1, 2015

2017

Mehmet Deveci, Jonathan W. Berry, Simon David Hammond, Champion of Graph Challenge, IEEE/DARPA/Amazon, Fastest triangle counting algorithm., September 13, 2017